Abstract: Existing approaches for table annotation with entities and types either capture the structure of table using graphical models, or learn embeddings of table entries without accounting for the complete syntactic structure. We propose TabGCN, that uses Graph Convolutional Networks to capture the complete structure of tables, knowledge graph and the training annotations, and jointly learns embeddings for table elements as well as the entities and types. To account for knowledge incompleteness, TabGCN’s embeddings can be used to discover new entities and types. Using experiments on 5 benchmark datasets, we show that TabGCN significantly outperforms multiple state-of-the-art baselines for table annotation, while showing promising performance on downstream table-related applications.